You can use JQuery to change the order of elements in the DOM (example) so the easiest route might be to write some code in your theme to re-order them.
This is a bit of a known issue with the navigation bar in adapt and we will address it soon. It's been on the back burner for a while because it's fairly easy to hack your way around (if using the framework) on a project-by-project yet solving it properly for all projects (and the authoring tool) is fairly complex.